H2O molecular dynamics

• INCAR

PREC = Normal    ! standard precision 
ENMAX = 400      ! cutoff should be set manually
ISMEAR = 0 ; SIGMA = 0.1
ISYM = 0         ! strongly recommended for MD
IBRION = 0       ! molecular dynamics
NSW = 100        ! 100 steps
POTIM = 1.0      ! timestep 1 fs
SMASS = -3       ! Nose Hoover thermostat
TEBEG =  2000 ; TEEND = 2000 ! temperature

• KPOINTS

Gamma-point only
 1        ! one k-point
rec       ! in units of the reciprocal lattice vector
 0 0 0 1  ! 3 coordinates and weight

• POSCAR

H2O _2
0.52918   ! scaling parameter
 12 0 0
 0 12 0
 0 0 12
1 2
select
cart
     0.00     0.00     0.00 T T F
     1.10    -1.43     0.00 T T F
     1.10     1.43     0.00 T T F

the pair correlation function can be visualized using e.g. the following script:

• plot_PCDAT

awk <PCDAT >PCDAT.dat '
NR==8 { pcskal=$1}
NR==9 { pcfein=$1}
NR>=13 {
 line=line+1
 if (line==257)  {
    print " "
    line=0
 }
 else
    print (line-0.5)*pcfein/pcskal,$1
}
'
cat >plotfile<<!
# set term postscript enhanced colour lw 2 "Helvetica" 20
# set output "pair_correlation.eps"
set title "pair-correlation of H2O at 2000 K"
set xlabel "r [Angstrom]"
set ylabel "g(r)"
plot [0:15] "PCDAT.dat"  w lines
!
gnuplot -persist plotfile

Download

1_10_H2Omd.tgz

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